Real data analyses
- Visium human dorsolateral prefrontal cortex dataset
- Multiple adult mouse brain datasets from different sources
- Xenium human breast cancer dataset
- Random sample of 20,000 cells from the segmentation results
- Applying
SPARKto the ST datasets segmented by different methods - Applying
RCTDandMCubeto the ST datasets segmented by different methods - Spatial clustering of cell niches using
CellCharter - Niche-differential expression analysis using
nicheDE
- Multiple human colorectal cancer datasets generated by different technologies
- Applying
RCTDandMCubeto the 10x Visium CRC dataset - Applying
RCTDandMCubeto the 10x Visium HD CRC dataset - Applying
RCTDandMCubeto the 10x Xenium CRC dataset - Comparison of
MCuberesults across multiple CRC datasets focusing on CAF and Macrophage - Comparison of
MCuberesults across multiple CRC datasets focusing on T cells - Consistency comparison of
MCube,CELINA, andC-SIDEon the CRC datasets from different technologies
- Applying
- 3D Drosophila embryo model constructed from Stereo-seq dataset